YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PFA3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDRLSLTSL FPRCLTTCLY IWTAYITLTR IHQIPRWFLA LTIVPTLAVA LYTYYKVIAR  60
   61 GPGSPLDFPD LLVHDLKAAE NGLELPPEYM SKRCLTLKHD GRFRVCQVCH VWKPDRCHHC 120
  121 SSCDVCILKM DHHCPWFAEC TGFRNQKFFI QFLMYTTLYA FLVLIYTCYE LGTWFNSGSF 180
  181 NRELIDFHLL GVALLAVAVF ISVLAFTCFS IYQVCKNQTT IEVHGMRRYR RDLEILNDSY 240
  241 GTNEHLENIF DLGSSMANWQ DIMGTSWLEW ILPIETFKYK KSKHTKDEKG LYFNVRPQVQ 300
  301 DRLLSSRCLE DQLLRRVTPR PSLEADRASV EIIDAN

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	29	0.87
Non-Cytoplasmic	30	36	0.73
Transmembrane Helix	37	55	0.95
Cytoplasmic	56	151	0.94
Transmembrane Helix	152	169	0.94
Non-Cytoplasmic	170	186	0.81
Transmembrane Helix	187	211	0.87
Cytoplasmic	212	336	0.96