YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NSG2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRGEPDPK KSTESICSLT KPQLYSLYDD DVVRSEDNEI YEELKRSVSI DSTKYSRDQT  60
   61 IDSTFYLAHK VGGSLPRNTV SSNNLERILS ASSIHENFPS RTRQTRQNIL HYLQAVLILS 120
  121 LSGFAYHELS RNLHDNHLLH PDFASRPLLL GVKLCNWLSN GVLPNWLGYG VEGLLFGSVV 180
  181 PILDNIFQTE VVKSSVHHDS LTSVIRSINA MLGVTFGIRK IQWNSSLQAA GAWGLLNIIL 240
  241 WLFFDGSISM LMSCICIGVG CCISCYKDII DGSQFLYFMD FYFLGSLMFG KLGRYLYSH

Type	Start	End	Confidence
Cytoplasmic	1	108	0.93
Transmembrane Helix	109	129	0.86
Non-Cytoplasmic	130	165	0.85
Transmembrane Helix	166	187	0.74
Cytoplasmic	188	202	0.76
Transmembrane Helix	203	223	0.53
Non-Cytoplasmic	224	237	0.48
Transmembrane Helix	238	266	0.78
Cytoplasmic	267	274	0.62
Transmembrane Helix	275	295	0.81
Non-Cytoplasmic	296	299	0.55