YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AVT4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	301	0.92
Transmembrane Helix	302	322	0.82
Non-Cytoplasmic	323	326	0.76
Transmembrane Helix	327	349	0.86
Cytoplasmic	350	369	0.92
Transmembrane Helix	370	394	0.86
Non-Cytoplasmic	395	408	0.87
Transmembrane Helix	409	431	0.87
Cytoplasmic	432	441	0.83
Transmembrane Helix	442	464	0.90
Non-Cytoplasmic	465	483	0.94
Transmembrane Helix	484	504	0.94
Cytoplasmic	505	515	0.88
Transmembrane Helix	516	539	0.92
Non-Cytoplasmic	540	560	0.86
Transmembrane Helix	561	579	0.92
Cytoplasmic	580	624	0.93
Transmembrane Helix	625	642	0.97
Non-Cytoplasmic	643	648	0.86
Transmembrane Helix	649	669	0.93
Cytoplasmic	670	688	0.86
Transmembrane Helix	689	707	0.92
Non-Cytoplasmic	708	713	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTNNGDGEH LGIRRNGNLR HPSNNMKIPR RAQSTVLNSN PFYSRKYSMS TLTPRDICRS  60
   61 VDSRVFVDMS SPNFQTLEDP HRDEIINSVR LNYLNSSKRS SVSHGNEAIP RVNPTKNSSA 120
  121 STIAAANVDS DDDETNLSSA GGDITHDIYK LVKAEDPKRL RRPRSMENVT PKIEHHTKLS 180
  181 SASGLNVPGG FRREFIVNKK RQEHQLNDSA SSDFTSHESD SINQSSPSSN QDIDKVPFLT 240
  241 RNFLEFLYVF GHFAGESFED DFIPDSSNMM IRGEDERSAL LSRPDHMKVL PSAKGTTSTK 300
  301 KVFLILLKSF IGTGVLFLPN AFHNGGLFFS VSMLAFFGIY SYWCYYILVQ AKSSCGVSSF 360
  361 GDIGLKLYGP WMRIIILFSL VITQVGFSGA YMIFTAKNLQ AFLDNVFHVG VLPLSYLMVF 420
  421 QTIIFIPLSF IRNISKLSLP SLLANFFIMA GLVIVIIFTA KRLFFDLMGT PAMGVVYGLN 480
  481 ADRWTLFIGT AIFAFEGIGL IIPVQDSMRN PEKFPLVLAL VILTATILFI SIATLGYLAY 540
  541 GSNVQTVILL NLPQSNIFVN LIQLFYSIAI MLSTPLQLFP AIKIIENKFF PKFTKIYVKH 600
  601 DDLTTRVELR PNSGKLNWKI KWLKNFIRSI IVIIVVSIAY FGSDNLDKFV SVIGSLACIP 660
  661 LVYIYPSMLH LRGNSLPETK GEFWRFKPML DTILIFFGIA SMLYTSYQSI FGV