YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PET8
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTFFLSLLS GAAAGTSTDL VFFPIDTIKT RLQAKGGFFA NGGYKGIYRG LGSAVVASAP  60
   61 GASLFFISYD YMKVKSRPYI SKLYSQGSEQ LIDTTTHMLS SSIGEICACL VRVPAEVVKQ 120
  121 RTQVHSTNSS WQTLQSILRN DNKEGLRKNL YRGWSTTIMR EIPFTCIQFP LYEYLKKTWA 180
  181 KANGQSQVEP WKGAICGSIA GGIAAATTTP LDFLKTRLML NKTTASLGSV IIRIYREEGP 240
  241 AVFFSGVGPR TMWISAGGAI FLGMYETVHS LLSKSFPTAG EMRA

Type	Start	End	Confidence
Signal Peptide	1	18	0.80
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	251	0.69
Transmembrane Helix	252	272	0.56
Cytoplasmic	273	284	0.47