YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SRT1
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMPSIIQIQ FVALKRLLVE TKEQMCFAVK SIFQRVFAWV MSLSLFSWFY VNLQNILIKA  60
   61 LRVGPVPEHV SFIMDGNRRY AKSRRLPVKK GHEAGGLTLL TLLYICKRLG VKCVSAYAFS 120
  121 IENFNRPKEE VDTLMNLFTV KLDEFAKRAK DYKDPLYGSK IRIVGDQSLL SPEMRKKIKK 180
  181 VEEITQDGDD FTLFICFPYT SRNDMLHTIR DSVEDHLENK SPRINIRKFT NKMYMGFHSN 240
  241 KCELLIRTSG HRRLSDYMLW QVHENATIEF SDTLWPNFSF FAMYLMILKW SFFSTIQKYN 300
  301 EKNHSLFEKI HESVPSIFKK KKTAMSLYNF PNPPISVSVT GDE

Type	Start	End	Confidence
Cytoplasmic	1	31	0.73
Transmembrane Helix	32	51	0.72
Non-Cytoplasmic	52	343	0.87