YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPC2
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAKPINVY SIPELNQALD EALPSVFARL NYERSYALLD AKLYIGYSIA VVAGLSFFLD  60
   61 KKFERDQIVT YQKLLVGAYF VLSLLFWYFS RFIEKGTVYV GKRRGTKEEI YVKTKFEKNE 120
  121 PLYLVELVQK KKGENSKKEL KAKLEVNKVF NESGYLQNDA YFKWFSEQHN VLDTKKNE

Type	Start	End	Confidence
Cytoplasmic	1	40	0.71
Transmembrane Helix	41	59	0.81
Non-Cytoplasmic	60	68	0.64
Transmembrane Helix	69	89	0.84
Cytoplasmic	90	178	0.65