YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAB1
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSTALKVAL GCIAIRLAVN SLFPSLQQQL DQSVEFSTPV TSFRSLQEGI YLLRNNIQVY  60
   61 NHGVVHHPPI LIFFLSLFNS DRLISLIYAL IDGLIAYQLT EVTKAFKNLK LKVWLPGLLY 120
  121 AVNPLTLLSC ISRSSIIFTN FAISSSLYCI LAEGNVLLSS VMISISGYLS VYPILLLIPL 180
  181 LGMLKSWRQR ILSAIVSILS LLILLLFSYS ILGSQSWSFL TQVYGSIITF EKVFPNLGLW 240
  241 WYFFIEMFDT FIPFFKAVFN IFIAVFITPF TLRYHKQPFY AFILCIGWIV LTKPYPSLGD 300
  301 AGFFFSFLPF FTPLFGYLRY PIISALLFLH AIVLAPIFYH LWVVLGSGNS NFFYAISLVY 360
  361 ALAIASILVD LNWAMLRIEY DNGIPNFKLK VTQI

Type	Start	End	Confidence
Cytoplasmic	1	116	0.63
Transmembrane Helix	117	137	0.69
Non-Cytoplasmic	138	160	0.60
Transmembrane Helix	161	182	0.87
Cytoplasmic	183	190	0.84
Transmembrane Helix	191	212	0.92
Non-Cytoplasmic	213	249	0.76
Transmembrane Helix	250	270	0.87
Cytoplasmic	271	277	0.65
Transmembrane Helix	278	295	0.78
Non-Cytoplasmic	296	300	0.55
Transmembrane Helix	301	318	0.72
Cytoplasmic	319	325	0.53
Transmembrane Helix	326	344	0.93
Non-Cytoplasmic	345	351	0.64
Transmembrane Helix	352	374	0.89
Cytoplasmic	375	394	0.73