YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERF2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVSRRSTR SESTSITKEE HTGEGSLTKL FFRWLVTLEG DQDINDGKGY ISLPNVSNYI  60
   61 FFLGGRFRTV KGAKPLWLGV LLAIVCPMVL FSIFEAHKLW HTQNGYKVLV IFFYYFWVIT 120
  121 LASFIRTATS DPGVLPRNIH LSQLRNNYQI PQEYYNLITL PTHSSISKDI TIKYCPSCRI 180
  181 WRPPRSSHCS TCNVCVMVHD HHCIWVNNCI GKRNYRFFLI FLLGAILSSV ILLTNCAIHI 240
  241 ARESGGPRDC PVAILLLCYA GLTLWYPAIL FTYHIFMAGN QQTTREFLKG IGSKKNPVFH 300
  301 RVVKEENIYN KGSFLKNMGH LMLEPRGPSF VSARKPHEAG DWRFMDLSPA HSFEKIQKI

Type	Start	End	Confidence
Cytoplasmic	1	75	0.97
Transmembrane Helix	76	94	0.98
Non-Cytoplasmic	95	107	0.77
Transmembrane Helix	108	129	0.86
Cytoplasmic	130	216	0.97
Transmembrane Helix	217	241	0.90
Non-Cytoplasmic	242	251	0.88
Transmembrane Helix	252	275	0.88
Cytoplasmic	276	359	0.95