YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	THI7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.81
Transmembrane Helix	47	70	0.82
Non-Cytoplasmic	71	77	0.64
Transmembrane Helix	78	99	0.82
Cytoplasmic	100	107	0.68
Transmembrane Helix	108	130	0.85
Non-Cytoplasmic	131	137	0.56
Transmembrane Helix	138	157	0.66
Cytoplasmic	158	168	0.50
Transmembrane Helix	169	190	0.85
Non-Cytoplasmic	191	196	0.47
Transmembrane Helix	197	218	0.95
Cytoplasmic	219	237	0.49
Transmembrane Helix	238	260	0.63
Non-Cytoplasmic	261	272	0.42
Transmembrane Helix	273	298	0.86
Cytoplasmic	299	318	0.37
Transmembrane Helix	319	333	0.60
Non-Cytoplasmic	334	334	0.07
Transmembrane Helix	335	349	0.70
Cytoplasmic	350	368	0.59
Transmembrane Helix	369	389	0.71
Non-Cytoplasmic	390	395	0.81
Transmembrane Helix	396	420	0.86
Cytoplasmic	421	441	0.97
Transmembrane Helix	442	464	0.89
Non-Cytoplasmic	465	483	0.85
Transmembrane Helix	484	504	0.88
Cytoplasmic	505	598	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFGSKVSRA LRFLEIPVKD RASVSFLKNP DLQPIKSANQ TWGFWSNFAY WGVMSFSVGT  60
   61 WMSASSALGV GLSYPETIGT FIVGDVLTII FTLANSCPGY DWKVGFTLAQ RFVFGIYGSA 120
  121 FGIIIRILMS IVNYGSNAWV GGLCINMILD SWSHHYLHLP NTLSSKVAMT TKELIGFIIF 180
  181 HVLTAFCYLM KPYHMNYILI WSCVATFFSM LGMVIYLAKQ AHGVGELFTS TKSTATGSTK 240
  241 AWAWVYMISY WFGSVSPGST NQSDYSRFGS SNWAIWAGTI CALLIPTTLI PVFGVIGAST 300
  301 CDKLYGEQYW MPMDIFNHWL TTNYSAGARA GAFFCGLSFV LSQMSYTISN CGFASGMDLA 360
  361 GLLPKYVDIK RGALFAACVS WACLPWNFYN SSSTFLTVMS SFGVVMTPII SVMICDNFLI 420
  421 RKRQYSITNA FILKGEYYFT KGVNWRAIVA WVCGMTPGLP GIAWEVNNDY FHNTGIVNFF 480
  481 YGDSFFSFLI SFFVYWGLCL LFPFKITVKH DDKDYYGAFT DEEARKKGMV PYSEISEEEI 540
  541 RAYTLGEGYT TGHEYRPEGS DDEIPELVKT SSENTNEFEI VHHKNNEKQS STASEKAA