YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCC1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIVALKNAV VTLIQKAKGS GGTSELGGSE STPLLRGSNS NSSRHDNLSS SSSDIIYGRN  60
   61 SAQDLENSPM SVGKDNRNGD NGSDNEKANL GFFQSVDPRV ISDLIIGLSD GLTVPFALTA 120
  121 GLSSLGDAKL VITGGFAELI SGAISMGLGG YLGAKSESDY YHAEVKKEKR KFYDNSNLIN 180
  181 REIEDILLEI NPNFSDETIV SFIKDLQRTP ELMVDFIIRY GRGLDEPAEN RELISAVTIG 240
  241 GGYLLGGLVP LVPYFFVSDV GTGLIYSIIV MVVTLFWFGY VKTKLSMGSG SSTSKKVTEG 300
  301 VEMVVVGGVA AGAAWFFVKL LG

Type	Start	End	Confidence
Cytoplasmic	1	103	0.93
Transmembrane Helix	104	122	0.66
Non-Cytoplasmic	123	129	0.56
Transmembrane Helix	130	152	0.66
Cytoplasmic	153	232	0.96
Transmembrane Helix	233	256	0.86
Non-Cytoplasmic	257	261	0.81
Transmembrane Helix	262	281	0.94
Cytoplasmic	282	299	0.90
Transmembrane Helix	300	318	0.93
Non-Cytoplasmic	319	322	0.76