YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RMP1
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEMDNVIRS LEQEYRLILL LNHRNKNQHR AASWYGSFNE MKRNCGQIIT LFSSRRLQAK  60
   61 RLKDVEWVKL HRLLQRALFR QLKRWYWQFN GVIALGQFVT LGCTLVTLLA NVRALYMRLW 120
  121 EINETEFIRC GCLIKNLPRT KAKSVVNDVE ELGEIIDEDI GNNVQENELV ITSIPKPLTE 180
  181 NCKKKKKRKK KNKSAIDGIF G

Type	Start	End	Confidence
Cytoplasmic	1	85	0.69
Transmembrane Helix	86	110	0.82
Non-Cytoplasmic	111	201	0.75