YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPC3
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFVQRFQN VSNQAFSMGI VMVVFIMASS YYQLINNNAF SVPSNIDNVK TLINVRTSRY  60
   61 FGSQRGKAKE NMKIKFDLNT DLTPLFNWNT KQVFVYLTAE YNSTEKITSE VTFWDKIIKS 120
  121 KDDAVIDVND LRSKYSIWDI EDGKFEGKDL VFKLHWNVQP WVGLLTYGET VGNYTLTVEN 180
  181 KNKV

Type	Start	End	Confidence
Cytoplasmic	1	13	0.75
Transmembrane Helix	14	35	0.86
Non-Cytoplasmic	36	184	0.88