YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERG3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLVLEVADH YVLDDLYAKV LPASLAANIP VKWQKLLGLN SGFSNSTILQ ETLNSKNAVK  60
   61 ECRRFYGQVP FLFDMSTTSF ASLLPRSSIL REFLSLWVIV TIFGLLLYLF TASLSYVFVF 120
  121 DKSIFNHPRY LKNQMAMEIK LAVSAIPWMS MLTVPWFVME LNGHSKLYMK IDYENHGVRK 180
  181 LIIEYFTFIF FTDCGVYLAH RWLHWPRVYR ALHKPHHKWL VCTPFASHSF HPVDGFLQSI 240
  241 SYHIYPLILP LHKVSYLILF TFVNFWTVMI HDGQYLSNNP AVNGTACHTV HHLYFNYNYG 300
  301 QFTTLWDRLG GSYRRPDDSL FDPKLRDAKE TWDAQVKEVE HFIKEVEGDD NDRIYENDPN 360
  361 TKKNN

Type	Start	End	Confidence
Cytoplasmic	1	69	0.79
Transmembrane Helix	70	84	0.47
Non-Cytoplasmic	85	95	0.49
Transmembrane Helix	96	120	0.89
Cytoplasmic	121	138	0.62
Transmembrane Helix	139	159	0.91
Non-Cytoplasmic	160	180	0.63
Transmembrane Helix	181	203	0.82
Cytoplasmic	204	218	0.60
Transmembrane Helix	219	233	0.34
Non-Cytoplasmic	234	248	0.48
Transmembrane Helix	249	268	0.71
Cytoplasmic	269	365	0.72