YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IZH3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMDSSSKSLT QYIPSPMGSL SRLKQKGVDN FQKVKKSGKS IYNYNYSKFV PHPFSTIDES  60
   61 VKHSESGRYD DLEIIRPTKE KEVTSSVYKR NSGKSLNTES QFSLGDSDAA TLVNSVATFK 120
  121 LNNASTSTSL VSSSSTVCSQ AKSSLRSPTS RLNDTKIKEE NNYISSVKDY CGPMRKSMVK 180
  181 TEILIEEPLN PTTDIKSFIN SYNHGKAYSL GETQHLHYYQ LPFPWRENRY IIHGYRFYNT 240
  241 HSKSLLSIFN WYGWHNETSN IWSHLLGAIY IIYLAIYDFP QSEVWRNSQV PPQARWIVFM 300
  301 FLAAALKCML SSVFWHTFNG TSFLKLRSKF ACVDYSGITI LITASILTTE FVTMYSCYWA 360
  361 MYTYMSISLA LGVFGVFMNW SPRFDRPEAR PLRIRFFILL ATMGVLSFLH LIFLTDLHYA 420
  421 ATLFSPVTYK SVVWYLVGVV FYGSFIPERF RSDVQVDKTI PTNYELSTDL EIITKQREIH 480
  481 FREVPTAHSK CSSCPSHAKS FKSLWWVDYF GCSHTFWHFF VVLGVIGHYR AILDMFAKRW 540
  541 ILS

Type	Start	End	Confidence
Cytoplasmic	1	259	0.84
Transmembrane Helix	260	277	0.82
Non-Cytoplasmic	278	295	0.87
Transmembrane Helix	296	318	0.91
Cytoplasmic	319	330	0.88
Transmembrane Helix	331	352	0.88
Non-Cytoplasmic	353	359	0.77
Transmembrane Helix	360	380	0.94
Cytoplasmic	381	393	0.87
Transmembrane Helix	394	414	0.93
Non-Cytoplasmic	415	430	0.76
Transmembrane Helix	431	446	0.51
Cytoplasmic	447	509	0.52
Transmembrane Helix	510	532	0.81
Non-Cytoplasmic	533	543	0.50