YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPI13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	54	0.95
Non-Cytoplasmic	55	447	0.99
Transmembrane Helix	448	469	0.89
Cytoplasmic	470	483	0.78
Transmembrane Helix	484	504	0.94
Non-Cytoplasmic	505	514	0.82
Transmembrane Helix	515	535	0.94
Cytoplasmic	536	553	0.89
Transmembrane Helix	554	572	0.93
Non-Cytoplasmic	573	581	0.70
Transmembrane Helix	582	601	0.90
Cytoplasmic	602	643	0.91
Transmembrane Helix	644	665	0.59
Non-Cytoplasmic	666	684	0.57
Transmembrane Helix	685	708	0.91
Cytoplasmic	709	714	0.55
Transmembrane Helix	715	738	0.80
Non-Cytoplasmic	739	759	0.51
Transmembrane Helix	760	785	0.77
Cytoplasmic	786	803	0.48
Transmembrane Helix	804	826	0.82
Non-Cytoplasmic	827	832	0.41
Transmembrane Helix	833	849	0.43
Cytoplasmic	850	857	0.64
Transmembrane Helix	858	881	0.46
Non-Cytoplasmic	882	902	0.52
Transmembrane Helix	903	926	0.86
Cytoplasmic	927	941	0.51
Transmembrane Helix	942	967	0.82
Non-Cytoplasmic	968	980	0.53
Transmembrane Helix	981	1005	0.85
Cytoplasmic	1006	1017	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEKTIKKSI LSSSNDEKII YKSRIKKFQK NHKFYIILLV FIAILQFISI AFFTRGFLLS  60
   61 RHVLDNISSQ NETSKLPPRF NKAVILVIDA LRFDFAIPVN ESHSNYNLNY HNNILSLYDS 120
  121 FASDKDASSL LLKFIADPPT TTLQRLKGLT TGSLPTFIDA GSNFDGTVIE EDNFLKQLHL 180
  181 ANKTVKFAGD DTWMALFHPF LSNDSFPLES LNVWDLDTVD NGVMDYFHDH LQQDKEWDVM 240
  241 IGHMLGIDHV GHKYGPDHFT MREKQIQVDQ FIDWILKSID DDTLLVILGD HGMDHTGNHG 300
  301 GDSIDELEST LFLYSKKPDM WRLKETSNYN IDNLGHDYRS VRQIDLVSSL ALLMGQPIPF 360
  361 NNLGWPIDEI ARNDREWSQF VNSAISQLQL YKDTMQIHHG NDEILEPLAK NISNTPPTSD 420
  421 PEKFVKLGHK YQKVFLQTCE ELWAKFDYYS IATGITLLAT SLVLLISITK LIPSIVVNQM 480
  481 VPEFVPGIII MVLVTNLCFH GIFYVYQQPS FVDQFWGTLL ATAIGIIIGC YITIFDRYNF 540
  541 IWIAMRLGET LADYWSRIAV MFMIIHALLF TSNSFTIWED RIVAFLLSTF GMLTLYEFVF 600
  601 LPKRQSTTAL LTATISEKEG TTSGVNPSTA NSNYLPLTRF ARLLGGYHSA VLIIFTRLAS 660
  661 MITICREEQG EYCIPTFNNQ NNSSWWVLGL CFLMIFILPA CITGYYNLTS SYQAAAPIWI 720
  721 NVFLKGILGL NFVYWSLTSL ENNSAVIAIP FLRDVTIFKF TLARIIAGFS LIASNVGWLM 780
  781 GPLCIKLNIH NTDVKSHEAT ILGYTNIYGS EFFLLVINVL ISILLFNKPL AQLSYFLMCN 840
  841 QLLSILEIID LLKLKENIIG PIALGLLSYQ HFFTTGHQAT IPSVQWDIGF MLSEKVTFPF 900
  901 TQIAIILNTF GPHILVSLSV ALLTLWSQPP DVLKPQTLLG RIVSNCGILL TYNTILCLSS 960
  961 FIWVTHFRRH LMVWKIFCPR FIFASLSLIV TQLVVTFGTI AFASGRLIKH INDIFWK