YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VBA5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.97
Transmembrane Helix	34	57	0.89
Non-Cytoplasmic	58	74	0.84
Transmembrane Helix	75	95	0.90
Cytoplasmic	96	103	0.74
Transmembrane Helix	104	123	0.93
Non-Cytoplasmic	124	128	0.74
Transmembrane Helix	129	154	0.84
Cytoplasmic	155	160	0.92
Transmembrane Helix	161	184	0.90
Non-Cytoplasmic	185	191	0.79
Transmembrane Helix	192	212	0.93
Cytoplasmic	213	254	0.94
Transmembrane Helix	255	276	0.92
Non-Cytoplasmic	277	287	0.88
Transmembrane Helix	288	309	0.95
Cytoplasmic	310	329	0.96
Transmembrane Helix	330	352	0.92
Non-Cytoplasmic	353	371	0.89
Transmembrane Helix	372	393	0.92
Cytoplasmic	394	401	0.81
Transmembrane Helix	402	422	0.93
Non-Cytoplasmic	423	430	0.81
Transmembrane Helix	431	452	0.88
Cytoplasmic	453	474	0.83
Transmembrane Helix	475	495	0.75
Non-Cytoplasmic	496	542	0.83
Transmembrane Helix	543	561	0.74
Cytoplasmic	562	582	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEETKYSSQQ EIEGACGSDA SLNARGSNDS PMGLSLYLCL ASLTLVLFIT ALDILIVGTI  60
   61 IDVVAEQFGN YSKTGWLVTG YSLPNAILSL IWGRFASIIG FQHSLILAIL IFEAGSLIAA 120
  121 LASSMNMLIF GRVVAGVGGS GLQTLCFVIG CTMVGERSRP LVISILSCAF AVAAIVGPII 180
  181 GGAFTTHVTW RWCFYINLPI GGLAIIMFLL TYKAENKGIL QQIKDAIGTI SSFTFSKFRH 240
  241 QVNFKRLMNG IIFKFDFFGF ALCSAGLVLF LLGLTFGGNK YSWNSGQVIT YLVLGVLLFI 300
  301 FSLVYDFFLF DKFNPEPDNI SYRPLLLRRL VAKPAIIIVN MVTFLLCTGY NGQMIYSVQF 360
  361 FQLIFASSAW KAGLHLIPIV ITNVIAAIAS GVITKKLGLV KPLLIFGGVL GVIGAGLMTL 420
  421 MTNTSTKSTQ IGVLLLPGFS LGFALQASLM SAQLQITKDR PEAAMDFIEV TAFNTFMKSL 480
  481 GTTLGGVLST TVFSASFHNK VSRAHLEPYE GKTVDDMILY RLQNYDGSHS TIGNILSDSI 540
  541 KNVFWMDLGF YALGFLFCSF SSNKKLIIPK KDDTPEDNLE DK