YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MCD4
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.74
Transmembrane Helix	9	30	0.72
Non-Cytoplasmic	31	457	0.99
Transmembrane Helix	458	480	0.89
Cytoplasmic	481	489	0.95
Transmembrane Helix	490	510	0.92
Non-Cytoplasmic	511	516	0.84
Transmembrane Helix	517	534	0.92
Cytoplasmic	535	551	0.82
Transmembrane Helix	552	574	0.80
Non-Cytoplasmic	575	575	0.52
Transmembrane Helix	576	594	0.60
Cytoplasmic	595	598	0.54
Transmembrane Helix	599	619	0.85
Non-Cytoplasmic	620	625	0.50
Transmembrane Helix	626	645	0.91
Cytoplasmic	646	654	0.48
Transmembrane Helix	655	676	0.87
Non-Cytoplasmic	677	688	0.57
Transmembrane Helix	689	708	0.94
Cytoplasmic	709	718	0.55
Transmembrane Helix	719	745	0.82
Non-Cytoplasmic	746	777	0.55
Transmembrane Helix	778	800	0.77
Cytoplasmic	801	814	0.38
Transmembrane Helix	815	841	0.74
Non-Cytoplasmic	842	847	0.49
Transmembrane Helix	848	869	0.86
Cytoplasmic	870	877	0.41
Transmembrane Helix	878	905	0.75
Non-Cytoplasmic	906	919	0.46

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWNKTRTTLL AVGVLFHLFY LWSIFDIYFI SPLVHGMSPY QSTPTPPAKR LFLIVGDGLR  60
   61 ADTTFDKVTH PVSGKTEFLA PFIRSLVMNN ATYGISHTRM PTESRPGHVA MIAGFYEDVS 120
  121 AVTKGWKSNP VNFDSFFNQS THTYSFGSPD ILPMFKDGAS DPNKVDTWMY DHTFEDFTQS 180
  181 SIELDAFVFR HLDQLFHNST LNSTLDYEIR QDGNVFFLHL LGCDTAGHSY RPYSAEYYDN 240
  241 VKYIDDQIPI LIDKVNKFFA DDKTAFIFTA DHGMSAFGSH GDGHPNNTRT PLVAWGAGLN 300
  301 KPVHNPFPVS DNYTENWELS SIKRNDVKQA DIASLMSYLI GVNYPKNSVG ELPIAYIDGK 360
  361 ESDKLAALYN NARSILEQYL VKQDEVIDSQ FFYKEYFKFV EKSHSHYLEE IETLIQRISE 420
  421 GENYLEQEAI TLTEELMQIT LEGLHYLTTY NWRFIRTIVT FGFVGWIFFS FIIFLKSFIL 480
  481 ENVIDDQKAS PLSHAVFGSI GILLNWILFY QHSPFNFYMY LLFPLYFWSY IFTNRSVLRS 540
  541 GIKEFFKGTS PWKRVLITIS IISVYEGIVY GFFHRWTFTL ITNILAFYPF ICGVRELSVN 600
  601 ILWIITSVLL STFTLFDAVK IEDLNQIHLA GLLIILSAFY ALYKIHSRIN SYTRAIFAIQ 660
  661 ISLVAAMLAV THRSVISLQL RQGLPRESQV AGWIIFFVSL FVMPILHYRK PNNDYKVRLL 720
  721 IIYLTFAPSF IILTISFESL FYFLFTSYMV QWIEIENKIK EMKTQKDENW LQVLRVSVIG 780
  781 FFLLQVAFFG TGNVASISSF SLESVCRLLP IFDPFLMGAL LMLKLIIPYG LLSTCLGILN 840
  841 LKLNFKDYTI SSLIISMSDI LSLNFFYLLR TEGSWLDIGI TISNYCLAIL SSLFMLILEV 900
  901 LGHVLLKNVI IQDKTKKTQ