YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AUR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANPFSRWFL SERPPNCHVA DLETSLDPHQ TLLKVQKYKP ALSDWVHYIF LGSIMLFVFI  60
   61 TNPAPWIFKI LFYCFLGTLF IIPATSQFFF NALPILTWVA LYFTSSYFPD DRRPPITVKV 120
  121 LPAVETILYG DNLSDILATS TNSFLDILAW LPYGLFHFGA PFVVAAILFV FGPPTVLQGY 180
  181 AFAFGYMNLF GVIMQNVFPA APPWYKILYG LQSANYDMHG SPGGLARIDK LLGINMYTTA 240
  241 FSNSSVIFGA FPSLHSGCAT MEALFFCYCF PKLKPLFIAY VCWLWWSTMY LTHHYFVDLM 300
  301 AGSVLSYVIF QYTKYTHLPI VDTSLFCRWS YTSIEKYDIS KSDPLAADSN DIESVPLSNL 360
  361 ELDFDLNMTD EPSVSPSLFD GSTSVSRSSA TSITSLGVKR A

Type	Start	End	Confidence
Cytoplasmic	1	44	0.57
Transmembrane Helix	45	67	0.83
Non-Cytoplasmic	68	70	0.37
Transmembrane Helix	71	85	0.66
Cytoplasmic	86	86	0.05
Transmembrane Helix	87	101	0.72
Non-Cytoplasmic	102	148	0.48
Transmembrane Helix	149	172	0.85
Cytoplasmic	173	178	0.42
Transmembrane Helix	179	201	0.78
Non-Cytoplasmic	202	245	0.54
Transmembrane Helix	246	270	0.64
Cytoplasmic	271	275	0.48
Transmembrane Helix	276	290	0.59
Non-Cytoplasmic	291	291	0.20
Transmembrane Helix	292	310	0.57
Cytoplasmic	311	401	0.56