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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VPS70
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMIQRERKR EKEEGQLKER TVVNMADPDD NEAEATGLQQ YSGETTRDDN EESMNDSFTL  60
   61 TSRNRGRSNT ISSIVSGYEI MKEHMDKEKF MYLILASLLL YMGFVAAFAP RTSLSRDFRR 120
  121 FHSSRLTNAE VYRIYLNSLQ QENRAKEHVY KYAGYMSNGA SDSSTFKYTL DEFLDMGYKP 180
  181 KVEKYYPWIG EPVDTNVAPL ENGKVVYEAS MIEDRVKGDP ASHARKRQKG FHQYSKNGSV 240
  241 TARYVFCNYG SISDYKLLLK KNIDIEDKIH IVRSGKILPG LKVKNAELYG ASSVIIYTDP 300
  301 FDDGKVTEEN GFLHYPYGPA RNPSYIRRDS VNYFSDTPGD PTTPGYPSKD SDTEHMSPVG 360
  361 RVPRIPSVPM SARDVQPILE RLNGRGFQIG PGSNIKDFGS FTGPSSSIDK VHLHNELTYN 420
  421 IKEMSSVEVS IPGIFTEGEI IIGAHRDSLA SSSAGDANSG SAILLEIARG MSKLLKHGWK 480
  481 PLRPIKLISW DGERSGLLGS TDYAEAHAAI LRRRALVYLN LDNAISGTNF HCKANPLLQD 540
  541 VIYEAAKLTE FNGHEDWSLF DHWKYTSNAT ISLLDGLSSY TSFQYHLGVP AAHFQFNAND 600
  601 TSGAVYHSNS VFDSPTWLEK FTNSDYKLHN TMAMFVGLTT LMLSENELAR FNTHVYLKKI 660
  661 YNWYIAWHSN LSSAFPQDDE VNSLAKRVLD LLKVATQEDS IQFDQQNGIL YKECREALPV 720
  721 WAFYKKIKSY IKLQRSNSKS KQIDQLFITH RGLKDREWMK YSLLAPSKFE GSVGEVLPGL 780
  781 HEGLADIDRN EVIQWLTILL SQFSNVRYLL Q

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle