YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OSM1
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSVRRVFI YVSIFVLIIV LKRTLSGTDQ TSMKQPVVVI GSGLAGLTTS NRLISKYRIP  60
   61 VVLLDKAASI GGNSIKASSG INGAHTDTQQ NLKVMDTPEL FLKDTLHSAK GRGVPSLMDK 120
  121 LTKESKSAIR WLQTEFDLKL DLLAQLGGHS VPRTHRSSGK LPPGFEIVQA LSKKLKDISS 180
  181 KDSNLVQIML NSEVVDIELD NQGHVTGVVY MDENGNRKIM KSHHVVFCSG GFGYSKEMLK 240
  241 EYSPNLIHLP TTNGKQTTGD GQKILSKLGA ELIDMDQVQV HPTGFIDPND RENNWKFLAA 300
  301 EALRGLGGIL LHPTTGRRFT NELSTRDTVT MEIQSKCPKN DNRALLVMSD KVYENYTNNI 360
  361 NFYMSKNLIK KVSINDLIRQ YDLQTTASEL VTELKSYSDV NTKDTFDRPL IINAFDKDIS 420
  421 TESTVYVGEV TPVVHFTMGG VKINEKSQVI KKNSESVLSN GIFAAGEVSG GVHGANRLGG 480
  481 SSLLECVVFG KTAADNIAKL Y

Type	Start	End	Confidence
Cytoplasmic	1	7	0.50
Transmembrane Helix	8	26	0.51
Non-Cytoplasmic	27	501	0.94