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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRK1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHFRRTMSRV PTLASLEIRY KKSFGHKFRD FIALCGHYFA PVKKYIFPSF IAVHYFYTIS  60
   61 LTLITSILLY PIKNTRYIDT LFLAAGAVTQ GGLNTVDINN LSLYQQIVLY IVCCISTPIA 120
  121 VHSCLAFVRL YWFERYFDGI RDSSRRNFKM RRTKTILERE LTARTMTKNR TGTQRTSYPR 180
  181 KQAKTDDFQE KLFSGEMVNR DEQDSVHSDQ NSHDISRDSS NNNTNHNGSS GSLDDFVKED 240
  241 ETDDNGEYQE NNSYSTVGSS SNTVADESLN QKPKPSSLRF DEPHSKQRPA RVPSEKFAKR 300
  301 RGSRDISPAD MYRSIMMLQG KHEATAEDEG PPLVIGSPAD GTRYKSNVNK LKKATGINGN 360
  361 KIKIRDKGNE SNTDQNSVSS EANSTASVSD ESSLHTNFGN KVPSLRTNTH RSNSGPIAIT 420
  421 DNAETDKKHG PSIQFDITKP PRKISKRVST FDDLNPKSSV LYRKKASKKY LMKHFPKARR 480
  481 IRQQIKRRLS TGSIEKNSSN NVSDRKPITD MDDDDDDDDN DGDNNEEYFA DNESGDEDER 540
  541 VQQSEPHSDS ELKSHQQQQE KHQLQQNLHR MYKTKSFDDN RSRAVPMERS RTIDMAEAKD 600
  601 LNELARTPDF QKMVYQNWKA HHRKKPNFRK RGWNNKIFEH GPYASDSDRN YPDNSNTGNS 660
  661 ILHYAESILH HDGSHKNGSE EASSDSNENI YSTNGGSDHN GLNNYPTYND DEEGYYGLHF 720
  721 DTDYDLDPRH DLSKGSGKTY LSWQPTIGRN SNFLGLTRAQ KDELGGVEYR AIKLLCTILV 780
  781 VYYVGWHIVA FVMLVPWIIL KKHYSEVVRD DGVSPTWWGF WTAMSAFNDL GLTLTPNSMM 840
  841 SFNKAVYPLI VMIWFIIIGN TGFPILLRCI IWIMFKISPD LSQMRESLGF LLDHPRRCFT 900
  901 LLFPKAATWW LLLTLAGLNI TDWILFIILD FGSTVVKSLS KGYRVLVGLF QSVSTRTAGF 960
  961 SVVDLSQLHP SIQVSYMLMM YVSVLPLAIS IRRTNVYEEQ SLGLYGDMGG EPEDTDTEDD1020
 1021 GNDEDDDEEN ESHEGQSSQR SSSNNNNNNN RKKKKKKKTE NPNEISTKSF IGAHLRKQLS1080
 1081 FDLWFLFLGL FIICICEGDK IKDVQEPNFN IFAILFEIVS AYGTVGLSLG YPDTNQSFSR1140
 1141 QFTTLSKLVI IAMLIRGKNR GLPYSLDRAI ILPSDRLEHI DHLEGMKLKR QARTNTEDPM1200
 1201 TEHFKRSFTD VKHRWGALKR KTTHSRNPKR SSTTL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle