YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TOK1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	70	0.93
Transmembrane Helix	71	93	0.83
Non-Cytoplasmic	94	137	0.90
Transmembrane Helix	138	160	0.91
Cytoplasmic	161	170	0.85
Transmembrane Helix	171	191	0.89
Non-Cytoplasmic	192	203	0.77
Transmembrane Helix	204	228	0.91
Cytoplasmic	229	247	0.86
Transmembrane Helix	248	270	0.89
Non-Cytoplasmic	271	298	0.80
Transmembrane Helix	299	321	0.89
Cytoplasmic	322	378	0.91
Transmembrane Helix	379	400	0.93
Non-Cytoplasmic	401	405	0.85
Transmembrane Helix	406	428	0.88
Cytoplasmic	429	436	0.83
Transmembrane Helix	437	457	0.95
Non-Cytoplasmic	458	691	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRFMNSFAK QTLGYGNMAT VEQESSAQAV DSHSNNTPKQ AKGVLAEELK DALRFRDERV  60
   61 SIINAEPSST LFVFWFVVSC YFPVITACLG PVANTISIAC VVEKWRSLKN NSVVTNPRSN 120
  121 DTDVLMNQVK TVFDPPGIFA VNIISLVLGF TSNIILMLHF SKKLTYLKSQ LINITGWTIA 180
  181 GGMLLVDVIV CSLNDMPSIY SKTIGFWFAC ISSGLYLVCT IILTIHFIGY KLGKYPPTFN 240
  241 LLPNERSIMA YTVLLSLWLI WGAGMFSGLL HITYGNALYF CTVSLLTVGL GDILPKSVGA 300
  301 KIMVLIFSLS GVVLMGLIVF MTRSIIQKSS GPIFFFHRVE KGRSKSWKHY MDSSKNLSER 360
  361 EAFDLMKCIR QTASRKQHWF SLSVTIAIFM AFWLLGALVF KFAENWSYFN CIYFCFLCLL 420
  421 TIGYGDYAPR TGAGRAFFVI WALGAVPLMG AILSTVGDLL FDISTSLDIK IGESFNNKVK 480
  481 SIVFNGRQRA LSFMVNTGEI FEESDTADGD LEENTTSSQS SQISEFNDNN SEENDSGVTS 540
  541 PPASLQESFS SLSKASSPEG ILPLEYVSSA EYALQDSGTC NLRNLQELLK AVKKLHRICL 600
  601 ADKDYTLSFS DWSYIHKLHL RNITDIEEYT RGPEFWISPD TPLKFPLNEP HFAFMMLFKN 660
  661 IEELVGNLVE DEELYKVISK RKFLGEHRKT L