YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LAS21
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.94
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	403	0.97
Transmembrane Helix	404	426	0.92
Cytoplasmic	427	437	0.77
Transmembrane Helix	438	459	0.90
Non-Cytoplasmic	460	465	0.86
Transmembrane Helix	466	487	0.85
Cytoplasmic	488	533	0.86
Transmembrane Helix	534	555	0.85
Non-Cytoplasmic	556	599	0.89
Transmembrane Helix	600	621	0.89
Cytoplasmic	622	636	0.92
Transmembrane Helix	637	658	0.69
Non-Cytoplasmic	659	682	0.62
Transmembrane Helix	683	704	0.56
Cytoplasmic	705	722	0.43
Transmembrane Helix	723	746	0.85
Non-Cytoplasmic	747	770	0.56
Transmembrane Helix	771	794	0.91
Cytoplasmic	795	802	0.51
Transmembrane Helix	803	826	0.79
Non-Cytoplasmic	827	830	0.49

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLKQFTCLS CAQLLAILLF IFAFFPRKIV LTGISKQDPD QDRDLQRDRP FQKLVFVIID  60
   61 ALRSDFLFDS QISHFNNVHQ WLNTGEAWGY TSFANPPTVT LPRLKSITTG STPSFIDLLL 120
  121 NVAQDIDSND LSEHDSWLQQ FIQHNNTIRF MGDDTWLKLF PQQWFDFADP THSFFVSDFT 180
  181 QVDNNVTRNL PGKLFQEWAQ WDVAILHYLG LDHIGHKDGP HSKFMAAKHQ EMDSILKSIY 240
  241 DEVLEHEDDD DTLICVLGDH GMNELGNHGG SSAGETSAGL LFLSPKLAQF ARPESQVNYT 300
  301 LPINASPDWN FQYLETVQQI DIVPTIAALF GMPIPMNSVG IIIPDFLQLL PNKLASMKEN 360
  361 FMHLWKLSDH HGEVALDDFT AEDIYTKMYT IQETLTKSAT NYNYPLLTLA FVGFLIITII 420
  421 AIYVLLRYSG PDFWQLRVSS LSVLLVSIIL GVSTFASSFI EEEHQLWWWI VTAFSAVPLF 480
  481 VYRLNVLIIV RWFIMMACVR SIKFWNNSGQ KFIYSNVMSN LLNQNPSWKW CLNMLTFLVL 540
  541 IMASAGFQVL HFIVTTILVG LCFTYKISWE IVNGNQAEIP LFMHDLLAKI DFAPTESNLI 600
  601 VLARVFFQAW AIVVISRLVL TKLKVLNKNY LIKDMKVYIT ILLMFQTSSQ NIGQFLVFQI 660
  661 LESQIFYFFQ NIPTASLTST SKIYFSNLVS LILQNFTFFQ FGGTNSISTI DLGNAYHGVS 720
  721 SDYNIYVVGI LMSVANFAPA IYWSMLPWSI NYASIPAQVK LQTFIRSKLP AFTYHCIFGT 780
  781 CLMTACVVLR FHLFIWSVFS PKLCYFLGWN FVMGLLNGWL PELALLCALD