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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Dscam-PAW
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.90
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMPNERLKW LMLFAAVALI ACGSQTLAAN PPDADQKGPV FLKEPTNRID FSNSTGAEIE  60
   61 CKASGNPMPE IIWIRSDGTA VGDVPGLRQI SSDGKLVFPP FRAEDYRQEV HAQVYACLAR 120
  121 NQFGSIISRD VHVRAVVHQF YQTRVIDEFV LRGNSATLKC LVPSFVADFI DVEGWIDEEG 180
  181 VEILRPLPDD SVDGKYLVLP SGELHIREVG PEDGYKSYQC RTKHRLTGET RLSATKGRLV 240
  241 ITEPIGSKAP SVPTGVMVFQ QQVPLLSTFA MLCQAQAFPV PVFRWYKFIE GTTRKQAVVL 300
  301 NDRVKQVSGT LIIKDAVVED SGKYLCVVNN SVGGESVETV LTVTAPLSAK IDPPTQTVDF 360
  361 GRPAVFTCQY TGNPIKTVSW MKDGKAIGHS EPVLRIESVK KEDKGMYQCF VRNDQESAEA 420
  421 SAELKLGGRF DPPVIRQAFQ EETMEPGPSV FLKCVAGGNP TPEISWELDG KKIANNDRYQ 480
  481 VGQYVTVNGD VVSYLNITSV HANDGGLYKC IAKSKVGVAE HSAKLNVYGL PYIRQMEKKA 540
  541 IVAGETLIVT CPVAGYPIDS IVWERDNRAL PINRKQKVFP NGTLIIENVE RNSDQATYTC 600
  601 VAKNQEGYSA RGSLEVQVMV APKIASFDFG EEPLNYGEPA SVQCTILGGD LPMNVTWLLN 660
  661 NATIDSFHDI SFSRIGKRIN VLSIESVSAH HAGFYSCHAQ NKAGITAHSA RLIVNVPPRW 720
  721 ILEPTDKAFA QGSDAKVECK ADGFPKPQVT WKKAVGDTPG EYKDLKKSDN IRVEEGTLHV 780
  781 DNIQKTNEGY YLCEAINGIG SGLSAVIMIS VQAPPEFTEK LRNQTARRGE PAVLQCEAKG 840
  841 EKPIGILWNM NNMRLDPKND NRYTIREEIL STGVMSSLSI KRTERSDSAL FTCVATNAFG 900
  901 SDDASINMIV QEVPEMPYAL KVLDKSGRSV QLSWAQPYDG NSPLDRYIIE FKRSRASWSE 960
  961 IDRVIVPGHT TEAQVQKLSP ATTYNIRIVA ENAIGTSQSS EAVTIITAEE APSGKPQNIK1020
 1021 VEPVNQTTMR VTWKPPPRTE WNGEILGYYV GYKLSNTNSS YVFETINFIT EEGKEHNLEL1080
 1081 QNLRVYTQYS VVIQAFNKIG AGPLSEEEKQ FTAEGTPSQP PSDTACTTLT SQTIRVGWVS1140
 1141 PPLESANGVI KTYKVVYAPS DEWYDETKRH YKKTASSDTV LHGLKKYTNY TMQVLATTAG1200
 1201 GDGVRSVPIH CQTEPDVPEA PTDVKALVMG NAAILVSWRP PAQPNGIITQ YTVYSKAEGA1260
 1261 ETETKTQKVP HYQMSFEATE LEKNKPYEFW VTASTTIGEG QQSKSIVAMP SDQVPAKIAS1320
 1321 FDDTFTATFK EDAKMPCLAV GAPQPEITWK IKGVEFSAND RMRVLPDGSL LIKSVNRQDA1380
 1381 GDYSCHAENS IAKDSITHKL IVLAPPQSPH VTLSATTTDA LTVKLKPHEG DTAPLHGYTL1440
 1441 HYKPEFGEWE TSEVSVDSQK HNIEGLLCGS RYQVYATGFN NIGAGEASDI LNTRTKGQKP1500
 1501 KLPEKPRFIE VSSNSVSLHF KAWKDGGCPM SHFVVESKKR DQIEWNQISN NVKPDNNYVV1560
 1561 LDLEPATWYN LRITAHNSAG FTVAEYDFAT LTVTGGTIAP LDDGSGHGNV HTRIRLPAWM1620
 1621 PEWLDLNFMV PLIATVVVVA VGICVVCVAL SRRRADDMRG GQKDVYYDVV YNQTMGPGAT1680
 1681 LDKRRPDLRD ELGYIAPPNR KLPPVPGSNY NTCDRIKRGR GGLRSNHSTW DPRRNPNLYE1740
 1741 ELKAPPVPMH GNHYGHAHGN AECHYRHPGM EDEICPYATF HLLGFREEMD PTKAMNFQTF1800
 1801 PHQNGHAGPV PGHAGTMLPP GHPGHVHSRS GSQSMPRANR YQRKNSQGGQ SSIYTPAPEY1860
 1861 DDPANCAEED QYRRYTRVNS QGGSLYSGPG PEYDDPANCA PEEDQYGSQY GGPYGQPYDH1920
 1921 YGSRGSMGRR SIGSARNPGN GSPEPPPPPP RNHDMSNSSF NDSKESNEIS EAECDRDHGP1980
 1981 RGNYGAVKRS PQPKDQRTTE EMRKLIERNE TGPKQLQLQQ ANGAGFTAYD TMAV

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