YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAN6
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNISRCSVHI YVYKKWCVLI LHCFIQVFIL HIHIELMKIF HTVEEVVQWR TQELRETRFR  60
   61 ETIGFVPTMG CLHSGHASLI SQSVKENTYT VVSIFVNPSQ FAPTEDLDNY PRTLPDDIKL 120
  121 LESLKVDVLF APNAHVMYPQ GIPLDIEEQK GPFVSVLGLS EKLEGKTRPN FFRGVATVVT 180
  181 KLFNIVMADV AYFGQKDIQQ FIVLQCMVDE LFVNTRLQMM PIVRNNNGLA LSSRNKYLCP 240
  241 ESLKISENLY RGLKAAENAI RRLAPGGRLS RSEIIDTVTQ IWAPYVDSHD FKIDYVSLAD 300
  301 FKTLDELSDV ENTSEQQPIV ISCAVYVTDR EKPDTVVRLI DNIVI

Type	Start	End	Confidence
Cytoplasmic	1	11	0.80
Transmembrane Helix	12	34	0.73
Non-Cytoplasmic	35	345	0.97