YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YKE4
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKASHICSYL LSIAPLVVSH GVHHNRDHGH EANHESKQSF LILKQESIFY SLVCFLQNHL  60
   61 FVLGPRYNAI VAILIIQLMP CLFVLFVPGL RKNDRASLTL SLLVSFSLGT LLGDILLHVI 120
  121 PESLSGVTDV TMVGGAIFLG FISFLTLDKT MRILSGTSND DGSIHSHSHS HTPQQTAEKK 180
  181 AGFNMSAYLN VISGIAHHIT DGIALATSFY SSTQVGIMTS IAVTFHEIPH ELGDFAILLS 240
  241 SGFTFPQAIR AQAVTAFGAV VGTSIGCWMN EIGNNSHKAT SSSANASELM LPFTAGGLIY 300
  301 IATTSVVPQI LHSSAPDSKL REFKKWALQL VFIFVGFAVM ALMDEH

Type	Start	End	Confidence
Cytoplasmic	1	6	0.58
Transmembrane Helix	7	22	0.37
Non-Cytoplasmic	23	68	0.67
Transmembrane Helix	69	89	0.94
Cytoplasmic	90	97	0.86
Transmembrane Helix	98	118	0.95
Non-Cytoplasmic	119	125	0.78
Transmembrane Helix	126	147	0.91
Cytoplasmic	148	247	0.67
Transmembrane Helix	248	269	0.81
Non-Cytoplasmic	270	288	0.60
Transmembrane Helix	289	311	0.82
Cytoplasmic	312	325	0.63
Transmembrane Helix	326	343	0.96
Non-Cytoplasmic	344	346	0.65