YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SMF2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.94
Transmembrane Helix	57	75	0.72
Non-Cytoplasmic	76	90	0.65
Transmembrane Helix	91	109	0.83
Cytoplasmic	110	129	0.73
Transmembrane Helix	130	150	0.82
Non-Cytoplasmic	151	161	0.80
Transmembrane Helix	162	185	0.90
Cytoplasmic	186	195	0.91
Transmembrane Helix	196	219	0.88
Non-Cytoplasmic	220	241	0.90
Transmembrane Helix	242	261	0.93
Cytoplasmic	262	311	0.92
Transmembrane Helix	312	335	0.86
Non-Cytoplasmic	336	361	0.89
Transmembrane Helix	362	385	0.81
Cytoplasmic	386	404	0.84
Transmembrane Helix	405	426	0.88
Non-Cytoplasmic	427	431	0.79
Transmembrane Helix	432	452	0.91
Cytoplasmic	453	516	0.96
Transmembrane Helix	517	539	0.89
Non-Cytoplasmic	540	549	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQEYEPIQ WSDESQTNND SVNDAYADVN TTHESRRRTT LQPNSTSQSM IGTLRKYARF  60
   61 IGPGLMVSVS YMDPGNYSTA VAAGSAHRYK LLFSVLVSNF MAAFWQYLCA RLGAVTGLDL 120
  121 AQNCKKHLPF GLNITLYILA EMAIIATDLA EVVGTAISLN ILFHIPLALG VILTVVDVLI 180
  181 VLLAYKPNGS MKGIRIFEAF VSLLVVLTVV CFTVELFYAK LGPAKEIFSG FLPSKAVFEG 240
  241 DGLYLSLAIL GATVMPHSLY LGSGVVQPRL REYDIKNGHY LPDANDMDNN HDNYRPSYEA 300
  301 ISETLHFTIT ELLISLFTVA LFVNCAILIV SGATLYGSTQ NAEEADLFSI YNLLCSTLSK 360
  361 GAGTVFVLAL LFSGQSAGIV CTLSGQMVSE GFLNWTVSPA LRRSATRAVA ITPCLILVLV 420
  421 AGRSGLSGAL NASQVVLSLL LPFVSAPLLY FTSSKKIMRV QLNRTKELSR TTDKKPVADR 480
  481 TEDDETIELE EMGIGSSSQE RSLVSPAPEY KDMSNGMIVT VLAIIVWLII SGLNFYMLLG 540
  541 FTTGKEVHL