YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MAL11
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	106	0.95
Transmembrane Helix	107	126	0.75
Non-Cytoplasmic	127	154	0.75
Transmembrane Helix	155	176	0.79
Cytoplasmic	177	184	0.70
Transmembrane Helix	185	203	0.92
Non-Cytoplasmic	204	209	0.66
Transmembrane Helix	210	231	0.84
Cytoplasmic	232	241	0.70
Transmembrane Helix	242	263	0.80
Non-Cytoplasmic	264	284	0.90
Transmembrane Helix	285	306	0.91
Cytoplasmic	307	371	0.99
Transmembrane Helix	372	393	0.91
Non-Cytoplasmic	394	403	0.90
Transmembrane Helix	404	426	0.88
Cytoplasmic	427	433	0.85
Transmembrane Helix	434	455	0.92
Non-Cytoplasmic	456	465	0.77
Transmembrane Helix	466	488	0.92
Cytoplasmic	489	499	0.93
Transmembrane Helix	500	522	0.88
Non-Cytoplasmic	523	532	0.82
Transmembrane Helix	533	550	0.95
Cytoplasmic	551	616	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIISLVSK KKAASKNEDK NISESSRDIV NQQEVFNTED FEEGKKDSAF ELDHLEFTTN  60
   61 SAQLGDSDED NENVINEMNA TDDANEANSE EKSMTLKQAL LKYPKAALWS ILVSTTLVME 120
  121 GYDTALLSAL YALPVFQRKF GTLNGEGSYE ITSQWQIGLN MCVLCGEMIG LQITTYMVEF 180
  181 MGNRYTMITA LGLLTAYIFI LYYCKSLAMI AVGQILSAIP WGCFQSLAVT YASEVCPLAL 240
  241 RYYMTSYSNI CWLFGQIFAS GIMKNSQENL GNSDLGYKLP FALQWIWPAP LMIGIFFAPE 300
  301 SPWWLVRKDR VAEARKSLSR ILSGKGAEKD IQVDLTLKQI ELTIEKERLL ASKSGSFFNC 360
  361 FKGVNGRRTR LACLTWVAQN SSGAVLLGYS TYFFERAGMA TDKAFTFSLI QYCLGLAGTL 420
  421 CSWVISGRVG RWTILTYGLA FQMVCLFIIG GMGFGSGSSA SNGAGGLLLA LSFFYNAGIG 480
  481 AVVYCIVAEI PSAELRTKTI VLARICYNLM AVINAILTPY MLNVSDWNWG AKTGLYWGGF 540
  541 TAVTLAWVII DLPETTGRTF SEINELFNQG VPARKFASTV VDPFGKGKTQ HDSLADESIS 600
  601 QSSSIKQREL NAADKC