YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PMT6
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	154	0.94
Transmembrane Helix	155	176	0.71
Non-Cytoplasmic	177	199	0.68
Transmembrane Helix	200	224	0.84
Cytoplasmic	225	232	0.94
Transmembrane Helix	233	253	0.87
Non-Cytoplasmic	254	254	0.40
Transmembrane Helix	255	274	0.64
Cytoplasmic	275	285	0.56
Transmembrane Helix	286	306	0.89
Non-Cytoplasmic	307	620	0.65
Transmembrane Helix	621	640	0.96
Cytoplasmic	641	653	0.78
Transmembrane Helix	654	675	0.87
Non-Cytoplasmic	676	684	0.74
Transmembrane Helix	685	706	0.88
Cytoplasmic	707	716	0.67
Transmembrane Helix	717	736	0.83
Non-Cytoplasmic	737	759	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKAKGTGFS SIDTEDENLR ERYVNQPKAN ASDIQDEQLD CFEQLEEKHR TKKNEEYTAL  60
   61 KILRDVIGPL LLTITSFYLR FQHIDQNNYV VWDEAHFGKF GSYYIKHEYY HDVHPPLGKM 120
  121 LIALSEWMAG FDGQFDFSSN NAYPENVNFK LMRQFNATFG ALCTPVAFFT AKWMGFNYFT 180
  181 VYLIATMVTL EHSYIVLSKF ILLDSMLLFF SMTTFACMIK LYTLRKQQMT KKWSLWMLLT 240
  241 GLSIGCVCSV KWVGLFITVV VGLYTCIELF LLYCDKELPR IKYYKHWLIR IINLIVIPFL 300
  301 IYLYCFKIHF VLLYKSGTGD STTNTLFQIN LEGTQIEAGP RDVAFGSELT IRSHGLSPNL 360
  361 LHSHIQVYPE GSGQRQITGY GFADSNNVWK FEFSRSSGLE LDQNGTLNGK IIPITDGVEV 420
  421 RLSHKNTGSN LHSHDVPSHV SRGNYEVSGY GSQSVGDEKD DWIVEIVKQM DSPNPVYSNE 480
  481 NSTILHPVST FFRLRHKVLG CYLASTGLTY PAWGFKQAEI VCKDSWSRRD KSTWWNVEDH 540
  541 WNHNLETAED YVPPKSNFWT DFILTNFAMA SSNNALVPDE DKYDSLSSDA WEWPTLHKGL 600
  601 RMCSWAGYIT RYYLMGSPFN TWISTVSLII FPFIILFILY RWRRQTLYLS DDQIWQITIQ 660
  661 GIFPFISWMT HYLPFAMMGR VTYVHHYVPA LYFAMLVFGF VLDFTLTRVH WMVKYPIYLS 720
  721 LFGGCIYIYN LFAPICQGMH GDKAEYLPLQ WLSTWDIAP