YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PCP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGVSSVMLG LRPATRIFFR SNISVSPSRT FVSYIGRSQS TSILKNAPNL EDNVTNLQKI  60
   61 IPKRFFSQTS ILKSRWKPIF NEETTNRYVR LNRFQQYQQQ RSGGNPLGSM TILGLSLMAG 120
  121 IYFGSPYLFE HVPPFTYFKT HPKNLVYALL GINVAVFGLW QLPKCWRFLQ KYMLLQKDYV 180
  181 TSKISIIGSA FSHQEFWHLG MNMLALWSFG TSLATMLGAS NFFSLYMNSA IAGSLFSLWY 240
  241 PKLARLAIVG PSLGASGALF GVLGCFSYLF PHAKILLFVF PVPGGAWVAF LASVAWNAAG 300
  301 CALRWGSFDY AAHLGGSMMG VLYGWYISKA VEKQRQRRLQ AAGRWF

Type	Start	End	Confidence
Cytoplasmic	1	102	0.98
Transmembrane Helix	103	125	0.87
Non-Cytoplasmic	126	144	0.87
Transmembrane Helix	145	163	0.95
Cytoplasmic	164	202	0.88
Transmembrane Helix	203	225	0.84
Non-Cytoplasmic	226	245	0.80
Transmembrane Helix	246	269	0.90
Cytoplasmic	270	275	0.79
Transmembrane Helix	276	299	0.88
Non-Cytoplasmic	300	309	0.77
Transmembrane Helix	310	327	0.97
Cytoplasmic	328	346	0.90