YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TPC1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKEEDSLRK GQNVAAWKTL LAGAVSGLLA RSITAPMDTI KIRLQLTPAN GLKPFGSQVM  60
   61 EVARSMIKNE GIRSFWKGNI PGSLLYVTYG SAQFSSYSLF NRYLTPFGLE ARLHSLVVGA 120
  121 FAGITSSIVS YPFDVLRTRL VANNQMHSMS ITREVRDIWK LEGLPGFFKG SIASMTTITL 180
  181 TASIMFGTYE TIRIYCDENE KTTAAHKKWE LATLNHSAGT IGGVIAKIIT FPLETIRRRM 240
  241 QFMNSKHLEK FSRHSSVYGS YKGYGFARIG LQILKQEGVS SLYRGILVAL SKTIPTTFVS 300
  301 FWGYETAIHY LRMY

Type	Start	End	Confidence
Cytoplasmic	1	74	0.61
Transmembrane Helix	75	94	0.63
Non-Cytoplasmic	95	112	0.65
Transmembrane Helix	113	133	0.85
Cytoplasmic	134	165	0.71
Transmembrane Helix	166	186	0.75
Non-Cytoplasmic	187	211	0.72
Transmembrane Helix	212	231	0.71
Cytoplasmic	232	314	0.63