YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VHT1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	121	0.95
Transmembrane Helix	122	142	0.60
Non-Cytoplasmic	143	190	0.60
Transmembrane Helix	191	212	0.76
Cytoplasmic	213	221	0.76
Transmembrane Helix	222	243	0.82
Non-Cytoplasmic	244	291	0.85
Transmembrane Helix	292	313	0.91
Cytoplasmic	314	361	0.89
Transmembrane Helix	362	382	0.84
Non-Cytoplasmic	383	406	0.80
Transmembrane Helix	407	425	0.92
Cytoplasmic	426	432	0.79
Transmembrane Helix	433	453	0.94
Non-Cytoplasmic	454	460	0.82
Transmembrane Helix	461	481	0.93
Cytoplasmic	482	492	0.81
Transmembrane Helix	493	513	0.89
Non-Cytoplasmic	514	525	0.83
Transmembrane Helix	526	548	0.91
Cytoplasmic	549	593	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTISNKSWRS YFPHLRKLPE DDQYLYSDDT NSSIIAEEEL HHSVDKSSKT DVTAETTAVE  60
   61 PHPHNLRHDL PYEVRDEAGR KWWKYFDEFE YRVNKEYKKS RKWYEFLYPN HTTQTKAERR 120
  121 LLYKLDIIIA LYFFMLCWSK SVDLNNYTNA YVSNMKEDLN MKGNDYVYTS TIANVGAIVF 180
  181 QLPFMYLLPR FPSHIILPVM DLGWTWFTFA CYRANSLAEL RAYRFILSAF GAAYYPVSQY 240
  241 ILGCWYAPDE INSRVCLFFC GQQLGSVTSG LLQSRIFKSL NGVHGLAGWR WMFLIDAIAI 300
  301 SLPTAIIGFF VIPGVPSKCY SLFLTDEEIR IARARNKRNQ IKDGVDKSKL APLWSRKLWK 360
  361 KVFCTPAFWV LVVFDTCSWN NMTAYSGSYT LWLKSNTKYS IAQVNNLSVI PACLGFAYVI 420
  421 FCAFGADLFR CKWIFMVFAA IMNTVSCALL IKWDIPSKAK WYAFFTTYFS VAASPCLWSF 480
  481 INDFLRFDPQ VKAITWIAIY SFSQSTYAWI PTLAWPTVES PRFKTGYTVS LIFGAIYGLW 540
  541 TFVVLFFYKR NEKKHALGNG IILYDSNKGE ELPEFVKKNM EERDGYYYLK RSS