YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX18
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKRLANRQN GFASFSCSSV GLRYGRTNPS TKRSFSLFQS VADTFLTVHE ASHIPWIVLV  60
   61 PLTTMTLRTL VTLPFSIWQR RRILKQQELR KLVQPITPII KLRLAAVTNK KSRNAARISS 120
  121 NGSFMPLQLQ NAGVLTPEQI TLLAVKETRK RQKKLFKKYN VPLWKNALLP MVQIPLWVTV 180
  181 SMGIRTLTET QLIESFYPSW FSALGFSSFD LSSPLVAMPL LAPILVGTLA VLNVELNGRL 240
  241 MFSSSLSSQG IKTISRNSTR VQEAMTSILN VSRLGCVVML AMSSQAPFLL SLYWISSQLF 300
  301 SLVQNIILNW IYPYQR

Type	Start	End	Confidence
Non-Cytoplasmic	1	53	0.63
Transmembrane Helix	54	75	0.77
Cytoplasmic	76	162	0.92
Transmembrane Helix	163	184	0.72
Non-Cytoplasmic	185	214	0.76
Transmembrane Helix	215	234	0.90
Cytoplasmic	235	268	0.88
Transmembrane Helix	269	296	0.71
Non-Cytoplasmic	297	316	0.46