YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MUP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.94
Transmembrane Helix	69	89	0.83
Non-Cytoplasmic	90	95	0.65
Transmembrane Helix	96	115	0.93
Cytoplasmic	116	139	0.86
Transmembrane Helix	140	161	0.84
Non-Cytoplasmic	162	181	0.78
Transmembrane Helix	182	199	0.95
Cytoplasmic	200	208	0.73
Transmembrane Helix	209	229	0.93
Non-Cytoplasmic	230	250	0.88
Transmembrane Helix	251	273	0.85
Cytoplasmic	274	288	0.82
Transmembrane Helix	289	311	0.87
Non-Cytoplasmic	312	340	0.90
Transmembrane Helix	341	360	0.93
Cytoplasmic	361	385	0.87
Transmembrane Helix	386	407	0.84
Non-Cytoplasmic	408	418	0.79
Transmembrane Helix	419	440	0.92
Cytoplasmic	441	452	0.92
Transmembrane Helix	453	473	0.92
Non-Cytoplasmic	474	489	0.86
Transmembrane Helix	490	511	0.93
Cytoplasmic	512	574	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEGRTFLSQ LNVFNKENYQ FSSSTTKKEV SNSTVDADNG ASDFEAGQQF ATELDQGEKQ  60
   61 LGILSCIGLI CNRMLGTGVF AVSSTIYTLC GSVGLALIMW AVGAIIAISG LYVYMEFGTA 120
  121 IPKNGGEKNY LEAIFRKPKF FITCMYAAYI FFLGWAAGNS INTAIMFLTA ADTEVTKWNQ 180
  181 RGIGVAVVFF AFLINSLNVK IGLYLQNILG IFKIGIVLFI SITGWVALGG GLKDGYQSHN 240
  241 FRNAFEGTET ATAYGIVNAL YSVIWSFVGY SNVNYALGEV KNPVRTLKIA GPTSMVFLAI 300
  301 IYIFVNIAYF AVVPKDKLIS SKLILAADFF DIVFGGQAKR AAAALVGLSA LGNVLSVIFS 360
  361 QGRIIQQLGR EGVLPFSNFF ASSKPFNSPM VGLFQHFIVC TVTILAPPPG DAYLLVQNLI 420
  421 SYPMNIINFA ISAGLLWIYW QRRQGKIEWN PPIKAGVFVT GFFTLSNLYL IIAPYVPPSN 480
  481 GESVYSSMPY WIHCVIAWGI FFFGGVYYVV WAQLLPRWGH YKLVSKDVLG EDGFWRVKIA 540
  541 KVYDDTIGDV DTQEDGVIET NIIEHYKSEQ EKSL