YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RRT6
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKASLNIAQ TKEIPLTDRR MGLRGWKACS RPHLLGRILL FMSILFITSA ELSSDVSSRE  60
   61 VYMPIFNNKL SFKVPPIKRS LLLGAALYED FEYSSNNSAS DGAFCTVFNA GMNDASREVV 120
  121 FEIHVMDVLQ EETDSSRFGG TSHERGRQSL GFSVFNNKNG DLLRSKKNLA SGTSVIEVNP 180
  181 GNCNEFLICF INLVYDGSWS SIDTEKSVTI KMTYNDKLDP DMLLHLVNQM TPQVVKALNT 240
  241 VSDGLFQIVS DTTLLQMESD RRDINEATYS YLIVGFVSLM VAQLISNIIV TTYLIIKIKS 300
  301 NPSSHIKKKG L

Type	Start	End	Confidence
Cytoplasmic	1	32	0.84
Transmembrane Helix	33	50	0.82
Non-Cytoplasmic	51	270	0.95
Transmembrane Helix	271	296	0.73
Cytoplasmic	297	311	0.78