YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FLC3
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	28	0.95
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	170	0.98
Transmembrane Helix	171	193	0.90
Cytoplasmic	194	201	0.79
Transmembrane Helix	202	224	0.83
Non-Cytoplasmic	225	229	0.80
Transmembrane Helix	230	250	0.85
Cytoplasmic	251	256	0.84
Transmembrane Helix	257	278	0.63
Non-Cytoplasmic	279	326	0.69
Transmembrane Helix	327	358	0.73
Cytoplasmic	359	377	0.91
Transmembrane Helix	378	396	0.94
Non-Cytoplasmic	397	404	0.78
Transmembrane Helix	405	426	0.95
Cytoplasmic	427	467	0.91
Transmembrane Helix	468	488	0.89
Non-Cytoplasmic	489	495	0.69
Transmembrane Helix	496	513	0.96
Cytoplasmic	514	522	0.73
Transmembrane Helix	523	543	0.93
Non-Cytoplasmic	544	557	0.76
Transmembrane Helix	558	584	0.84
Cytoplasmic	585	802	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFLQVYKSS ALIGLIILLA SKVNLAEAKR KLVATSLVTC MENSQLSANS FDVVFNPDDR  60
   61 SLHYDLDMST QIDSYIFADI DVYAYGFKII TKNVDLCSIN WKQFCPVHPG NIQIDSIEYI 120
  121 SSEYVNEIPG IAYQVPDIDA YARVKITNNV SEYLACIQIY FSNGKTVSQI GVKWATAVVA 180
  181 GIGLLLSAIL STFGNSTAAS HISANTMSLF LYFQSVVVVA MQHVHRVPPI AAAWAENLVW 240
  241 SMGLIRISFM QRIFRWYVQS TGGTPSLYLT STSMSVLAQR SWQYLMELPL IKRATNVLYG 300
  301 NANTLIFRGI KRLGYKMGIE NTSIVCTGFT FFVLCGYVLA GFIIVFKCCV ELATRLGWIQ 360
  361 KARFWEFRKQ WRMILKGALL RYIYIGFVQL TILSFWEFTE RDSPAVIVIA CLFILLSCGL 420
  421 MLWAAWRTVF FARRSVALYN NPAALLYGDE YVLHKYGFFY TMFNANHYWW NIVLLSYIFV 480
  481 KSLLVGFAQA SGQTQVLFMF ILDLFYFVAI IYYKPYLDRP TNIMNILIAT VTVVNSFLFM 540
  541 FFSDLFNQSY KVAAIMGWIF FIMNAAFSFI LLMMILAFAG MMLFSKNPDL RFKPAKDDRT 600
  601 SFQRNTMKPE GTVNRSVANE LLALGNVAKD HDDNSDYESN DTGVNDELKQ AQDETTPTTV 660
  661 TSSDDNKPTF SEKILSKFSR PKNENASTDA LRVEAPKQQT FPHNLTNLSR ENLSTLGSKP 720
  721 YPGHTRSQSD AHNGLINSFE EEDTSSNTDP FHDSTEGDLL DTSSSDGGFR SQNYVRDDSI 780
  781 NSLGNNKQPL RKPPGFFDEG FM