YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	USE1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAETSNDPFL SYVLSSKQLT NLNRLRRKAV TKQLGSSDDN KVSEEFLRYQ HTYQREAFEY  60
   61 LQTKHDAHKI MESQYEQYQS SSKTRRYSID LDSVDAVDTE SQTEYPNEEF IDRNEDSEAV 120
  121 MELRKRLLGK GQNKGLGYET TKSVDRQIED QDTLQQDLIQ DMSKLVGSLK QGAVAFQSAL 180
  181 DEDKQVLGAA EIGIQVASQG LMDVSGKLRK YDKSKLSYLF YITVFIFMIL GLVFTFIIIQ 240
  241 LFPAL

Type	Start	End	Confidence
Cytoplasmic	1	217	0.96
Transmembrane Helix	218	239	0.97
Non-Cytoplasmic	240	245	0.76