YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HNM1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	59	0.98
Transmembrane Helix	60	83	0.84
Non-Cytoplasmic	84	92	0.76
Transmembrane Helix	93	118	0.83
Cytoplasmic	119	138	0.95
Transmembrane Helix	139	161	0.90
Non-Cytoplasmic	162	182	0.84
Transmembrane Helix	183	203	0.94
Cytoplasmic	204	213	0.84
Transmembrane Helix	214	234	0.94
Non-Cytoplasmic	235	254	0.90
Transmembrane Helix	255	277	0.87
Cytoplasmic	278	291	0.82
Transmembrane Helix	292	314	0.92
Non-Cytoplasmic	315	343	0.96
Transmembrane Helix	344	366	0.94
Cytoplasmic	367	393	0.93
Transmembrane Helix	394	416	0.88
Non-Cytoplasmic	417	422	0.77
Transmembrane Helix	423	445	0.92
Cytoplasmic	446	455	0.94
Transmembrane Helix	456	481	0.81
Non-Cytoplasmic	482	490	0.86
Transmembrane Helix	491	510	0.88
Cytoplasmic	511	563	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIRNDNASG GYMQPDQSSN ASMHKRDLRV EEEIKPLDDM DSKGAVAADG EVHLRKSFSL  60
   61 WSILGVGFGL TNSWFGISTS MVAGISSGGP MMIVYGIIIV ALISICIGTS LGELSSAYPH 120
  121 AGGQFWWSLK LAPPKYKRFA AYMCGSFAYA GSVFTSASTT LSVATEVVGM YALTHPEFIP 180
  181 KRWHIFVCFE LLHLFLMFFN CYGKSLPIIS SSSLYISLLS FFTITITVLA CSHGKFNDAK 240
  241 FVFATFNNET GWKNGGIAFI VGLINPAWSF SCLDCATHMA FEVEKPERVI PIAIMGTVAI 300
  301 GFVTSFCYVI AMFFSIQDLD AVLSSTTGAP ILDIYNQALG NKSGAIFLGC LILFTSFGCV 360
  361 IACHTWQARL CWSFARDNGL PLSRLWSQVN PHTGVPLNAH LMSCAWITLI GLLYLASSTA 420
  421 FQSLITGCIA FLLLSYIIPV ICLLAKKRNI AHGPFWLGKF GFFSNIVLLG WTVFSVVFFS 480
  481 FPPVLPVTKD NMNYVCVVIV GYTAYSILYW KYKGKKEFHA LEESENEQAE YSNNFDTIED 540
  541 SREFSVAASD VELENEHVPW GKK