YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STT3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.82
Transmembrane Helix	14	36	0.85
Non-Cytoplasmic	37	77	0.89
Transmembrane Helix	78	101	0.83
Cytoplasmic	102	110	0.78
Transmembrane Helix	111	131	0.91
Non-Cytoplasmic	132	139	0.77
Transmembrane Helix	140	158	0.94
Cytoplasmic	159	168	0.66
Transmembrane Helix	169	185	0.87
Non-Cytoplasmic	186	206	0.69
Transmembrane Helix	207	228	0.86
Cytoplasmic	229	238	0.80
Transmembrane Helix	239	259	0.92
Non-Cytoplasmic	260	265	0.84
Transmembrane Helix	266	285	0.93
Cytoplasmic	286	298	0.78
Transmembrane Helix	299	322	0.90
Non-Cytoplasmic	323	359	0.92
Transmembrane Helix	360	379	0.93
Cytoplasmic	380	385	0.84
Transmembrane Helix	386	403	0.86
Non-Cytoplasmic	404	406	0.56
Transmembrane Helix	407	429	0.79
Cytoplasmic	430	444	0.79
Transmembrane Helix	445	468	0.85
Non-Cytoplasmic	469	718	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSDRSCVLS VFQTILKLVI FVAIFGAAIS SRLFAVIKFE SIIHEFDPWF NYRATKYLVN  60
   61 NSFYKFLNWF DDRTWYPLGR VTGGTLYPGL MTTSAFIWHA LRNWLGLPID IRNVCVLFAP 120
  121 LFSGVTAWAT YEFTKEIKDA SAGLLAAGFI AIVPGYISRS VAGSYDNEAI AITLLMVTFM 180
  181 FWIKAQKTGS IMHATCAALF YFYMVSAWGG YVFITNLIPL HVFLLILMGR YSSKLYSAYT 240
  241 TWYAIGTVAS MQIPFVGFLP IRSNDHMAAL GVFGLIQIVA FGDFVKGQIS TAKFKVIMMV 300
  301 SLFLILVLGV VGLSALTYMG LIAPWTGRFY SLWDTNYAKI HIPIIASVSE HQPVSWPAFF 360
  361 FDTHFLIWLF PAGVFLLFLD LKDEHVFVIA YSVLCSYFAG VMVRLMLTLT PVICVSAAVA 420
  421 LSKIFDIYLD FKTSDRKYAI KPAALLAKLI VSGSFIFYLY LFVFHSTWVT RTAYSSPSVV 480
  481 LPSQTPDGKL ALIDDFREAY YWLRMNSDED SKVAAWWDYG YQIGGMADRT TLVDNNTWNN 540
  541 THIAIVGKAM ASPEEKSYEI LKEHDVDYVL VIFGGLIGFG GDDINKFLWM IRISEGIWPE 600
  601 EIKERDFYTA EGEYRVDARA SETMRNSLLY KMSYKDFPQL FNGGQATDRV RQQMITPLDV 660
  661 PPLDYFDEVF TSENWMVRIY QLKKDDAQGR TLRDVGELTR SSTKTRRSIK RPELGLRV