YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUG1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTTDSGFVL YHYTPSKAAA IVFVVLFIIM TVIFAVQTLY AARKSSKALK NNPFESSDDK  60
   61 VDSLEDAEYK QLKITPTVFA FIPFFTGCIM EAVGYIGRAL SSSNPERTTP YIIQSVLLLV 120
  121 APALIAATIY MIFGRLLHVM RCQSLILISA RFGTTFFVVG DVFSFFLQAA GGGLMSKAGS 180
  181 TKTGSGLITA GLFVQVIFFG FFIINEIRFT VNVKRRCLFY EDISRKWIFV NATLLLSSML 240
  241 ILLRSIVRIV EFIQGFNGYI ISHEYFIYVF DAVPMLLVII AFSVGSFFGN VFDVIKECQT 300
  301 LSN

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.97
Transmembrane Helix	18	40	0.94
Cytoplasmic	41	76	0.96
Transmembrane Helix	77	97	0.92
Non-Cytoplasmic	98	111	0.86
Transmembrane Helix	112	134	0.90
Cytoplasmic	135	146	0.85
Transmembrane Helix	147	170	0.83
Non-Cytoplasmic	171	185	0.83
Transmembrane Helix	186	207	0.91
Cytoplasmic	208	226	0.92
Transmembrane Helix	227	247	0.95
Non-Cytoplasmic	248	266	0.91
Transmembrane Helix	267	292	0.83
Cytoplasmic	293	303	0.94