YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FTR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNKVFNVAV FFVVFRECLE AVIVISVLLS FLKQAIGEHD RALYRKLRIQ VWVGVLLGFI  60
   61 ICLAIGAGFI GAYYSLQKDI FGSAEDLWEG IFCMIATIMI SMMGIPMLRM NKMQSKWRVK 120
  121 IARSLVEIPH RKRDYFKIGF LSRRYAMFLL PFITVLREGL EAVVFVAGAG ITTQGSHASA 180
  181 YPLPVVVGLI CGGLVGYLLY YGASKSSLQI FLILSTSILY LISAGLFSRG AWYFENYRFN 240
  241 LASGGDASEG GDGNGSYNIR KAVYHVNCCN PELDNGWDIF NALLGWQNTG YLSSMLCYNI 300
  301 YWLVLIIVLS LMIFEERRGH LPFTKNLQLK HLNPGYWIKN KKKQELTEEQ KRQLFAKMEN 360
  361 INFNEDGEIN VQENYELPEQ TTSHSSSQNV ATDKEVLHVK ADSL

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.71
Transmembrane Helix	12	32	0.79
Cytoplasmic	33	50	0.91
Transmembrane Helix	51	73	0.93
Non-Cytoplasmic	74	87	0.91
Transmembrane Helix	88	108	0.94
Cytoplasmic	109	146	0.91
Transmembrane Helix	147	171	0.80
Non-Cytoplasmic	172	179	0.83
Transmembrane Helix	180	201	0.94
Cytoplasmic	202	209	0.84
Transmembrane Helix	210	231	0.92
Non-Cytoplasmic	232	290	0.97
Transmembrane Helix	291	314	0.88
Cytoplasmic	315	404	0.99