YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MSC2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	73	0.65
Transmembrane Helix	74	95	0.89
Non-Cytoplasmic	96	105	0.53
Transmembrane Helix	106	136	0.71
Cytoplasmic	137	154	0.53
Transmembrane Helix	155	173	0.69
Non-Cytoplasmic	174	190	0.75
Transmembrane Helix	191	216	0.69
Cytoplasmic	217	235	0.79
Transmembrane Helix	236	255	0.95
Non-Cytoplasmic	256	261	0.75
Transmembrane Helix	262	281	0.93
Cytoplasmic	282	312	0.82
Transmembrane Helix	313	335	0.90
Non-Cytoplasmic	336	400	0.52
Transmembrane Helix	401	423	0.86
Cytoplasmic	424	433	0.43
Transmembrane Helix	434	454	0.84
Non-Cytoplasmic	455	467	0.52
Transmembrane Helix	468	493	0.83
Cytoplasmic	494	503	0.52
Transmembrane Helix	504	526	0.85
Non-Cytoplasmic	527	542	0.52
Transmembrane Helix	543	565	0.90
Cytoplasmic	566	571	0.47
Transmembrane Helix	572	593	0.89
Non-Cytoplasmic	594	740	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRGRWCFLV SVSSRIMNLQ ELLAKVPLLL SYPTIILSSN LIVPSHNDLI SRAASTSAAE  60
   61 YADEKLIFFS TDHAIRLIFL PTFVASSFNL FAHYFNFINY SSRRKYYVLF TAIYFLSILT 120
  121 AIFHPIQSTC ITLLIIKLLT TADESSPKIA LNFKTILKTF VPFITLTLVI LRWDPSFDAS 180
  181 SGDVNKISTS LAAYALLILT LRYASPLILS TLSSSIGVVS KDTSVAQHSI SRNKRFPLIL 240
  241 VLPIFSFVLL YLMTIVNKTY NIQLLMVFVF FGCLSIFFLS LKDLFTEDGN QKKGGQEDEY 300
  301 CRMFDIKYMI SYLWLTRFTI LLTGIMAIVV HFLSFNEITS SIKTDLLSLL FVVVAEYVSS 360
  361 FSNKQPDSHS HNHAHHHSHL TDSLPLENES MFKQMALNKD TRSIFSFLLL NTAFMFVQLL 420
  421 YSFRSKSLGL LSDSLHMALD CTSLLLGLIA GVLTKKPASD KFPFGLNYLG TLAGFTNGVL 480
  481 LLGIVCGIFV EAIERIFNPI HLHATNELLV VATLGLLVNL VGLFAFDHGA HDHGGTDNEN 540
  541 MKGIFLHILA DTLGSVGVVI STLLIKLTHW PIFDPIASLL IGSLILLSAL PLLKSTSANI 600
  601 LLRLDDKKHN LVKSALNQIS TTPGITGYTT PRFWPTESGS SGHSHAHTHS HAENHSHEHH 660
  661 HDQKNGSQEH PSLVGYIHVQ YVDGENSTII KKRVEKIFEN VSIKAWVQVE PQNSTCWCRA 720
  721 TSMNTISANP NSLPLQPIAN