YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSY1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	282	0.99
Transmembrane Helix	283	307	0.82
Non-Cytoplasmic	308	315	0.67
Transmembrane Helix	316	339	0.80
Cytoplasmic	340	356	0.77
Transmembrane Helix	357	378	0.86
Non-Cytoplasmic	379	395	0.84
Transmembrane Helix	396	417	0.90
Cytoplasmic	418	426	0.74
Transmembrane Helix	427	449	0.87
Non-Cytoplasmic	450	500	0.97
Transmembrane Helix	501	522	0.92
Cytoplasmic	523	541	0.88
Transmembrane Helix	542	562	0.95
Non-Cytoplasmic	563	629	0.93
Transmembrane Helix	630	654	0.82
Cytoplasmic	655	673	0.93
Transmembrane Helix	674	694	0.93
Non-Cytoplasmic	695	707	0.85
Transmembrane Helix	708	730	0.87
Cytoplasmic	731	750	0.97
Transmembrane Helix	751	772	0.90
Non-Cytoplasmic	773	783	0.73
Transmembrane Helix	784	802	0.94
Cytoplasmic	803	852	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSVNQIYDL FPNKHNIQFT DSHSQEHDTS SSLAKNDTDG TISIPGSIDT GILKSIIEEQ  60
   61 GWNDAELYRS SIQNQRFFLT DKYTKKKHLT MEDMLSPEEE QIYQEPIQDF QTYNKRVQRE 120
  121 YELRERMEEF FRQNTKNDLH ILNEDSLNQQ YSPLGPADYV LPLDRYSRMK HIASNFFRKK 180
  181 LGIPRKLKRR SHYNPNAEGH TKGNSSILSS TTDVIDNASY RNIAIDENVD ITHKEHAIDE 240
  241 INEQGASGSE SVVEGGSLLH DIEKVFNRSR ATRKYHIQRK LKVRHIQMLS IGACFSVGLF 300
  301 LTSGKAFSIA GPFGTLLGFG LTGSIILATM LSFTELSTLI PVSSGFSGLA SRFVEDAFGF 360
  361 ALGWTYWISC MLALPAQVSS STFYLSYYNN VNISKGVTAG FITLFSAFSI VVNLLDVSIM 420
  421 GEIVYVAGIS KVIIAILMVF TMIILNAGHG NDIHEGVGFR YWDSSKSVRN LTYGLYRPTF 480
  481 DLADAGEGSK KGISGPKGRF LATASVMLIS TFAFSGVEMT FLASGEAINP RKTIPSATKR 540
  541 TFSIVLISYV FLIFSVGINI YSGDPRLLSY FPGISEKRYE AIIKGTGMDW RLRTNCRGGI 600
  601 DYRQISVGTG YSSPWVVALQ NFGLCTFASA FNAILIFFTA TAGISSLFSC SRTLYAMSVQ 660
  661 RKAPPVFEIC SKRGVPYVSV IFSSLFSVIA YIAVDQTAIE NFDVLANVSS ASTSIIWMGL 720
  721 NLSFLRFYYA LKQRKDIISR NDSSYPYKSP FQPYLAIYGL VGCSLFVIFM GYPNFIHHFW 780
  781 STKAFFSAYG GLMFFFISYT AYKVLGTSKI QRLDQLDMDS GRREMDRTDW TEHSQYLGTY 840
  841 RERAKKLVTW LI