YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HOM2
Protein type:	Globular with Signal Peptide
Type Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKKIAGVL GATGSVGQRF ILLLANHPHF ELKVLGASSR SAGKKYVDAV NWKQTDLLPE  60
   61 SATDIIVSEC KSEFFKECDI VFSGLDADYA GAIEKEFMEA GIAIVSNAKN YRREQDVPLI 120
  121 VPVVNPEHLD IVAQKLDTAK AQGKPRPGFI ICISNCSTAG LVAPLKPLIE KFGPIDALTT 180
  181 TTLQAISGAG FSPGVPGIDI LDNIIPYIGG EEDKMEWETK KILAPLAEDK THVKLLTPEE 240
  241 IKVSAQCNRV AVSDGHTECI SLRFKNRPAP SVEQVKTCLK EYVCDAYKLG CHSAPKQTIH 300
  301 VLEQPDRPQP RLDRNRDSGY GVSVGRIRED PLLDFKMVVL SHNTIIGAAG SGVLIAEILL 360
  361 ARNLI

Type	Start	End	Confidence
Signal Peptide	1	17	0.68
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	365	0.90