YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SWF1
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWNLLFVLL IGFVVLILLS PVFKSTWPFS TFYRNVFQPF LVDDQKYRWK LHLVPLFYTS  60
   61 IYLYLVYTYH MRVESTIKNE LFLLERILIV PIIILPPVAL GILAMVSRAE DSKDHKSGST 120
  121 EEYPYDYLLY YPAIKCSTCR IVKPARSKHC SICNRCVLVA DHHCIWINNC IGKGNYLQFY 180
  181 LFLISNIFSM CYAFLRLWYI SLNSTSTLPR AVLTLTILCG CFTIICAIFT YLQLAIVKEG 240
  241 MTTNEQDKWY TIQEYMREGK LVRSLDDDCP SWFFKCTEQK DDAAEPLQDQ HVTFYSTNAY 300
  301 DHKHYNLTHY ITIKDASEIP NIYDKGTFLA NLTDLI

Type	Start	End	Confidence
Cytoplasmic	1	4	0.52
Transmembrane Helix	5	27	0.85
Non-Cytoplasmic	28	48	0.56
Transmembrane Helix	49	71	0.77
Cytoplasmic	72	81	0.51
Transmembrane Helix	82	107	0.80
Non-Cytoplasmic	108	175	0.51
Transmembrane Helix	176	200	0.86
Cytoplasmic	201	210	0.49
Transmembrane Helix	211	232	0.94
Non-Cytoplasmic	233	336	0.52