YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YDR018C
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.38
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKHSQKYRRY GIYEKTGNPF IKGLQRLLIA CLFISGSLSI VVFQICLQVL LPWSKIRFQN  60
   61 GINQSKKAFI VLLCMILNMV APSSLNVTFE TSRPLKNSSN AKPCFRFKDR AIIIANHQMY 120
  121 ADWIYLWWLS FVSNLGGNVY IILKKALQYI PLLGFGMRNF KFIFLSRNWQ KDEKALTNSL 180
  181 VSMDLNARCK GPLTNYKSCY SKTNESIAAY NLIMFPEGTN LSLKTREKSE AFCQRAHLDH 240
  241 VQLRHLLLPH SKGLKFAVEK LAPSLDAIYD VTIGYSPALR TEYVGTKFTL KKIFLMGVYP 300
  301 EKVDFYIREF RVNEIPLQDD EVFFNWLLGV WKEKDQLLED YYNTGQFKSN AKNDNQSIVV 360
  361 TTQTTGFQHE TLTPRILSYY GFFAFLILVF VMKKNH

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.59
Transmembrane Helix	27	51	0.87
Cytoplasmic	52	67	0.58
Transmembrane Helix	68	89	0.84
Non-Cytoplasmic	90	123	0.66
Transmembrane Helix	124	143	0.67
Cytoplasmic	144	375	0.48
Transmembrane Helix	376	392	0.83
Non-Cytoplasmic	393	396	0.38