YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COS7
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKENEVKDEK SVDVLSFKQL ESQKIVLPQD LFRSSFTWFC YEIYKSLAFR IWMLLWLPLS  60
   61 VWWKLSNNCI YPLIVSLLVL FLGPIFVLVI CGLSRKRSLS KQLIQFCKEI TENTPSSDPH 120
  121 DWEVVVANLN SYLYENKAWN TKNFFFNATD CEKMFRTTVL EPFSLKKDKA AKVKSFKDSV 180
  181 PYIEEALQVY ATGFDKQWKL FITEKSWSPV GLEDVQLPKD IHRSKLTWFL KRIFTIYSLP 240
  241 LWLAFLNCIC VSQHFCLAFR ILCPGLFFLM MVWLFQNMRT TALLVKMEHK MQFLLTIINE 300
  301 QESGANGWDE IARKMNRYLF EKKAWKNEEF FFDGIDCEWF FSHFFYRLLS AKKSMWLLPL 360
  361 NVELWPYIKE AQLSRNEESL MKK

Type	Start	End	Confidence
Cytoplasmic	1	45	0.92
Transmembrane Helix	46	63	0.87
Non-Cytoplasmic	64	69	0.78
Transmembrane Helix	70	93	0.91
Cytoplasmic	94	227	0.99
Transmembrane Helix	228	251	0.82
Non-Cytoplasmic	252	255	0.71
Transmembrane Helix	256	277	0.88
Cytoplasmic	278	383	0.97