YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NUS1
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTMIKKDDK AMEPPNEKPH RKIERDDVPE SSNHIPPPES GVLKGGKVNS KTRALKAVTS  60
   61 IIADADENPQ KKVNNETNGV QKQKTEDLSK RIGKFEYLFY KFLLVLLYIC FGLFRYGQYQ 120
  121 YNKMKLRIFS IIYNHAYTPQ LIRQDVIPLK KIPKRLAAIL EVKPVGDVGG GVTGLLNDAS 180
  181 EIVCWTVSAG IKHLMLYDYD GILQRNVPEL RMEIHSNLAK YFGPAHVPNY AVKIPHSNKI 240
  241 FYNLDGIETE TDVGNEIEAN QEKDKIAIEI SLLSNRDGRE TIVDLTKTMA ELCAVNELSV 300
  301 SDITMDLVDS ELKQLVGPEP DLLLYFGPSL DLQGFPPWHI RLTEFYWEKD NNEVIYSVFI 360
  361 RGLRQYAGCK VNVGK

Type	Start	End	Confidence
Cytoplasmic	1	96	0.83
Transmembrane Helix	97	117	0.82
Non-Cytoplasmic	118	375	0.94