YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PMT5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.96
Transmembrane Helix	47	64	0.74
Non-Cytoplasmic	65	96	0.70
Transmembrane Helix	97	115	0.70
Cytoplasmic	116	129	0.52
Transmembrane Helix	130	152	0.87
Non-Cytoplasmic	153	156	0.44
Transmembrane Helix	157	176	0.75
Cytoplasmic	177	180	0.37
Transmembrane Helix	181	199	0.80
Non-Cytoplasmic	200	230	0.54
Transmembrane Helix	231	250	0.89
Cytoplasmic	251	264	0.75
Transmembrane Helix	265	289	0.84
Non-Cytoplasmic	290	582	0.84
Transmembrane Helix	583	607	0.88
Cytoplasmic	608	620	0.86
Transmembrane Helix	621	640	0.87
Non-Cytoplasmic	641	652	0.74
Transmembrane Helix	653	674	0.87
Cytoplasmic	675	680	0.84
Transmembrane Helix	681	699	0.93
Non-Cytoplasmic	700	743	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKEHLLKVD PIPDVTIKRG PLRSFLITKP CDNLSSLRTV TSSKEKLLVG CLLIFTAIVR  60
   61 LHNISLPNSV VFGENEVGTF VSQYVNNIFF TDVHPPLVAM LYATVSSVFG YKGLFNYGNI 120
  121 GTEYTANVPY VAMRFFSATL GIVSVLVLYL TLRVSGVKIA VAAICAVCFA IENSFVTLSR 180
  181 FTLIEGPFVF FMACAVYFFR RSELYLPNSC KANKSLLAAS IALGFAVSSK WAGLFTIAWA 240
  241 GIIVLWRVWF MIGDLSRPIG SSIKYMAFQF TCLLAIPAFI YFLIFSVHIK TLNVNGISSS 300
  301 FFPAEFRKTL KYNNVIKETV AEVAVGSAVS LNHVGTAGGY LHSHLHNYPA GSMQQQVTLY 360
  361 PHIDQNNKWI IELAEHPNEN VTSFQNLTDG TIIKLRQLKN GCRLHSHDHK PPVSQNADWQ 420
  421 KEVSCYGYEG FEGDINDDWI IEIDKKRSEP GPAQEHIRAI ETKFRLKHYL TGCYLFSHPE 480
  481 KLPEWGFGQQ EVTCAYFARE DLTSWYIEEN ENEISLPNPE KVSYKKMSFW QKFVAIHKFM 540
  541 FYLNNYMDTS HAYSSEPKTW PLMLRGIDFW NENGREVYFL GNAVLWWSVT AFICTFIIGV 600
  601 AVELLAWKLG VNILRDKHII NFHYQVFQYL LGFAAHYFPY FFVGQKLFLY DYLPAYYFGI 660
  661 LAFGHALDLI STYISNKRNN TGYIVVAIFM VVCFYFFSEH SPLIYATGWS SNLCKRSKWL 720
  721 GSWDFYCNSL LLSDSHYELN AES