YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PER1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.92
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	115	0.93
Transmembrane Helix	116	134	0.89
Cytoplasmic	135	153	0.96
Transmembrane Helix	154	174	0.93
Non-Cytoplasmic	175	186	0.81
Transmembrane Helix	187	205	0.92
Cytoplasmic	206	215	0.71
Transmembrane Helix	216	235	0.92
Non-Cytoplasmic	236	248	0.85
Transmembrane Helix	249	270	0.92
Cytoplasmic	271	290	0.96
Transmembrane Helix	291	311	0.95
Non-Cytoplasmic	312	325	0.88
Transmembrane Helix	326	345	0.85
Cytoplasmic	346	357	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLAVVVTLL VHCFLVTCSP GDNLDEFIDC TYACEYNRRC PNSQINYIDP ETNMFHDIEF  60
   61 FDTPPLYSKL LFWDCISDCD YQCQHIITRW RIDEEEEIYQ FHGKWPFLRV LGTQEFFSTI 120
  121 FSIGNFIPHY KGFVKFSRII REEGDRRRKN SRSILIWNYL YVTVAGMLAW TASSVFHCRD 180
  181 LIITEKLDYF FAGLTVLTGF HAIFARMTSM FLYPKIAQAF TASVAAIFAL HILRLYVDWS 240
  241 YTYNMRFNIF FGVLQYILLI MLSCQNYHAL QKQKLMGEFK KTAYSSFKRQ IFKLCVIPIL 300
  301 LVIVTTMAMS LELFDFFSYE WQIDAHALWH LCTIWPSWVL YDFFLEDYAY WGNRQLY